Program 2020

Contenu, Previous meetings, 2020 (Lyon), Program 2020
Tuesday February 4
9:45-10:00 Welcome
10:00-10:45 Marie Delattre Atypical reproductive system and programmed genome elimination in Mesorhabditis nematodes
10:50-11:30 Coffee break
11:30-11:45 Maxime Courcelle Evolution of rodent Olfactory Receptors is governed by Phylogeny, Ecology and Functional constraints
11:50-12:05 Marina Braso Vives Copy number variation and fixed duplications among 198 Indian-origin rhesus macaques (Macaca mulatta)
12:10-12:25 Rémi Allio Roadkill genomics: high quality mammalian genomes from hybrid assembly of short Illumina reads and MinION long reads
12:30-13:45 Lunch
13:45-14:30 Tanja Schwander Evolution of gene expression in asexual animals
14:35-14:50 Florian Bénitière The rate of alternative splicing in metazoans is driven by the mutation-selection-drift balance
14:55-15:10 Romain Bulteau RAPToR (Real Age Prediction from Transcriptome staging on Reference)
15:15-15:30 Jos Käfer Detecting sex-linkage in DNA/RNA samples from species from natural populations
15:35-15:50 Xavier Vekemans Genotyping and de novo discovery of allelic variants at the Brassicaceae self-incompatibility locus from short read sequencing data
15:55-16:35 Coffee break
16:35-16:50 Nathanaëlle Saclier Naturally radioactive environments influence the rate and spectrum of mutation
16:55-17:10 Arthur Weyna A model to detect and classify hybrids from single Illumina genomes
17:15-17:30 Léa Picard DGINN, an automated and highly-flexible pipeline for the Detection of Genetic INNovations on protein-coding genes
17:35-17:50 Nicolas Lartillot Mechanistic codon models for detecting adaptation
17:55-18:10 Maxime Policarpo Machine learning-based estimation of relaxed selection and cave brotula genomes shed new light on genes decay in subterranean vertebrates
Wednesday February 5
9:00-9:45 Vincent Ranwez Understanding the Strengths and Limits of Multiple Sequence Alignment Inference and Filtering
9:50-10:05 Guillaume Scholz Phylo-kmers for the detection of recombinants in viruses
10:10-10:50 Coffee break
10:50-11:05 Clotilde Garrido Evidence Supporting an Antimicrobial Origin of Targeting Peptides, Computational Approches
11:10-11:25 Guy Perrière Horizontal transfers and the evolution of magnetotaxis
11:30-11:45 Yishu Wang Quokka: eQUivalence Klasses enumerator fOr Kophylogeny Associations
11:50-12:05 Hugo Menet Multi-scale phylogenetic approaches for the evolution of the holobiont
12:10-13:25 Lunch
13:25-13:40 Matthieu Haudiquet The interplay between capsules and horizontal gene transfer shapes bacterial evolution
13:45-14:00 Martijn Callens Codon usage evolution of horizontally transferred genes in Pseudomonas aeruginosa.
14:05-14:20 Léa Pradier PlasForest: a homology-based random forest classifier for plasmid detection
14:25-14:40 Ingrid Lafontaine Additional layer of regulation via convergent gene orientation in yeasts
14:45-15:15 Coffee break
15:15-15:30 Léopold Carron Repeat element from the point of view of 3D chromosome folding
15:35-15:50 Corentin Dechaud Sex and the TEs: role of transposable elements in the control of sexual genes in teleost fish
15:55-16:10 Anthony Venon Contribution of transposable elements to structural evolution of the apple tree genome in the context of domestication
16:15-16:30 Final discussions
16:30 End of Alphy’2020