Program 2017

Contenu, Previous meetings, 2017 (Lyon), Program 2017
  • Wednesday and Thursday morning: amphithéatre de la Rotonde [map]]
  • Thursday afternoon: amphithéatre Chappe [map]
Wednesday February 1
9:45-10:00 Welcome
10:00-10:40 Guillaume Achaz The quiescent X, the replicative Y and the Autosomes
10:45-11:00 Damien de Vienne Lifemap: Exploring the Entire Tree of Life
11:05-11:35 Coffee break
11:40-11:55 Mohamed Amine Chebbi In search of W sex chromosome-specific sequences in the genome of the isopod crustacean Armadillidium vulgare
12:00-12:15 Alexandrina Bodrug Assembly of tetraploid quinoa (Chenopodium quinoa) and separation into ancestral sub-genomes
12:20-12:35 Jean-François Flot A new take on heterozygous genome assembly
12:40-13:55 Lunch
13:55-14:10 Wandrille Duchemin Co-evolution aware phylogeny : a Dynamic Programming algorithm for joint optimization of topology, reconciliation and coevents
14:15-14:30 Adam Panagiotis East, West, and once upon a time: Just how ancient is the Wood-Ljungdahl carbon fixation autotrophic pathway?
14:35-14:50 Héloïse Philippon Origin and evolution of cellular signaling pathways : AKT/mTOR as a case study
14:55-15:10 Darren Parker What happens to sex-biased gene expression following a transition to asexuality
15:15-15:30 Jens Bast Sex vs Asex: Do expressed genes evolve at different rates?
15:35-15:50 Laurent Guéguen Modeling and analysing the evolution of gene expression time-series
15:55-16:25 Coffee break
16:25-16:40 Malvina Kadlec Targeted NGS for species level phylogenomics: ’made to measure’ or ’one size fits all’?
16:45-17:00 Paul Simion CroCo: A new tool to detect pervasive cross contaminations in RNA-Seq data
17:05-17:20 Mick Van Vlierberghe Forty-Two, a next-generation tool for enriching alignments of orthologous genes and gene families.
17:25-17:40 Arnaud Di Franco Detecting erroneous stretches in amino acid Multiple Sequences Alignment
17:45-18:00 Hervé Philippe An empirical study of the impact of the model of sequence evolution in phylogenomics
Thursday February 2
9:00-9:40 Gwenaël Piganeau Genomic Insights Into the Biology of the Smallest Photosynthetic Eukaryotes
9:45-10:00 Adrian Davin Genomics fossils for dating the tree of life
10:05-10:20 Clémentine François The potential contribution of horizontal gene transfers to evolutionary novelty in asexuals
10:25-10:55 Coffee break
11:00-11:15 Fidel Botero-Castro Molecular evolution of the non-annotated fraction of genes in avian genomes
11:20-11:35 Aude Bernheim CRISPR-Cas systems interactions with DNA repair pathways shape CRISPR-Cas systems distribution among bacterial genomes
11:40-11:55 Jean Cury Mining conjugative systems in bacterial genomes.
12:00-12:15 Maxime Tourte Identification of putative molecular actors involved in the natural transformation of the hyperthermophilic archaeon Pyrococcus furi
12:20-12:35 Damien Paulet Ribo-seq and Codon Usage Bias
12:40-13:55 Lunch
13:55-14:10 Emmanuelle Lerat Evolutionary history of LTR-retrotransposons among 20 Drosophila species
14:15-14:30 Aubin Fleiss Chromosomal rearrangements and genome evolution in the Saccharomycotina subphylum
14:35-14:50 Ingrid Lafontaine How de novo genes arise in yeasts
14:55-15:10 Guillaume Louvel Genomic Markers of Species Diversification in Vertebrates
15:15-15:30 Margot Correa Influence of transposable elements on the fate of duplicate genes in human
15:35-15:50 Frédéric Brunet Vertebrate Genes Harboring High Retention Rates Through Whole Genome Duplications
15:55-16:10 Guillaume Beslon Aevol-4b: Toward a new simulation platform to benchmark phylogenetic tools.
16:15-16:30 Final discussions
16:30 End of Alphy’2017